Scaffold Ga0307402_10337609

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307402_10337609

Scaffold Ga0307402_10337609

Overview

Basic Information
Taxon OID	3300030653 Open in IMG/M
Scaffold ID	Ga0307402_10337609 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-29 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	864
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-70.3658	Long. (^o)	-8.2821	Alt. (m)		Depth (m)	30
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009730	Metatranscriptome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307402_103376091	F009730	N/A	FGHFQDGECQQIKASLVKMEQPGTGRVRLSDFYKPAMGGQWQFQESVSYLRQLGCLDESDPARPSVIIANYVSSPSNCIASSSFYSVCCMDECEGLLSHLEQKIAAPEATSTQIATLVSDLSSSSVAAPRELSTSLLGRLGEIAAGHGGSVPLHGRLFAQWMHHAFPRECPYPHVSGTTNPQTPDEWLESTGEETSATTEEMSVHVDTVHPPQQEVAPLPWHPEEELLVARKGFAGAGDKSTFASMRSAVLMMIVSSMAYGVVCHASSTSAGKGKFGSEKAEKFMV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.