NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316363_10018888

Scaffold Ga0316363_10018888


Overview

Basic Information
Taxon OID3300030659 Open in IMG/M
Scaffold IDGa0316363_10018888 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3790
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001851Metagenome / Metatranscriptome626Y
F005764Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0316363_100188883F001851AGGAGMSATSISFVLLIALFTILLLYRMRRLKPQSAGFRSQRMCPSCGLITSRLKTCCLECGKSF
Ga0316363_100188884F005764GAGGMEPILCSLRAVLRGALILGLSLSVFAQIPAAPDASGFPLGRNTPDFPLTALPPALIPRPVFEFRGIRIGDEMKGAERTFLALKVPSLSSKPGLCGSDGINRIETCTDVLDTGEYVNMTMLDQRVAQIYVSTDRRTQGNTYNSYVLALGTKYGRPDKLETKYYRDGVETGSSEEHLRWLSGDQYMEGSEIDRAITIGSRALDAEIAEQEHAYERD
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