NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187754_1003939

Scaffold Ga0187754_1003939


Overview

Basic Information
Taxon OID3300030669 Open in IMG/M
Scaffold IDGa0187754_1003939 Open in IMG/M
Source Dataset NameMetatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 30_T1F_3236KB8 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)40.7982Long. (o)-77.8599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001767Metagenome / Metatranscriptome638Y

Sequences

Protein IDFamilyRBSSequence
Ga0187754_10039391F001767N/ACCLFCSATCTMASDPLLGKKGLGHSKLSIYYGADEYMAELQKKYELDHEIATLKSAQPDEGDPHAANAKPSTDKLLIVEKNDQNRSLKTGRLFPTPNKPDPMPLELAFLFTKITPEQMIYMWNVLTFIFCLQCLMIITYCAALATFPESFWTCTLCFAVPFAYICIQQIYIDHDVMHGVTFPVYEFQKFITHPFSDFISLPWEEFVLEHARHHASTVDLLIQGEFGWDPEEFHYALQQWAGPMGPNWYKYLLTVPWIPVIHFFGLNDTGFLFALEWWMSFPEADASGKCNKEFWTKWMPRRVKHNAVVLGLWACVWLLGTWPLGRPLSQGWRFVLPVTCAARVGFSLAWMFITNFTHSLPWNKFLENDPARTWPKLHNIMALAVGGKHRWNEMLFHDVHHAFPNAMGTLSQRGR
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