NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307403_10135686

Scaffold Ga0307403_10135686


Overview

Basic Information
Taxon OID3300030671 Open in IMG/M
Scaffold IDGa0307403_10135686 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-34 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1239
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-71.3639Long. (o)-13.979Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000920Metatranscriptome833Y
F015560Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0307403_101356861F000920AGGVAAATAVLKTFYEKAAMATGLLQVDVARPKMGTDEWNALANPNFEPTGAGFGQGSEDKVDKGHKAGMQTFGKKYSGNQDAAGGVMAMLEVILSDFANLEADTKASEASAQTAFETFMVESKKTKAVKSRKVEMDNSDKAAAELKLQEDTKDLKGTQDELLAADRYYSKLVPQCIDQGQTFEERTAARESEIASLKQALEILG
Ga0307403_101356862F015560N/AEITAIGKAVEILQSPESSGNADKYLDLAQASTSTALTQLRGQESAGGVRGHVRDFLASEGQRLHSKSLSLLAQKVAANPFGKVTKMIDDMITRLLNEANEDAQHEGFCDKEIGKSKVTRNKLSEDIDGLNAAVEDGKSTIMMLT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.