NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307403_10290876

Scaffold Ga0307403_10290876


Overview

Basic Information
Taxon OID3300030671 Open in IMG/M
Scaffold IDGa0307403_10290876 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-34 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)869
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-71.3639Long. (o)-13.979Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088019Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307403_102908761F088019N/AMQQQTIFQPAQARVPEYGAIEKGEEEDDPTVTLNKSAFKRGVAMTHTFLLFAIFVPPFMLCLQIANNEDLEYFVGSSVAKLSYIVVAIVLLVPMVHLQARLHPWAFLLTVWVPAFIFITIGWHYRDHASGTVQALQSIDCSGFAEKRDLQVSYNKAQTLYNNCGKDVTNSIEECPQYPEVFDSNAADFTYLKSLEHRFQCAGLCSSARRLWESAGSSAPSCGLFAAQWVRGGLIEAQFVLWYNVVVLLASVPVFITLLDGFFKDY
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