Scaffold Ga0268250_10047775

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0268250_10047775

Scaffold Ga0268250_10047775

Overview

Basic Information
Taxon OID	3300030692 Open in IMG/M
Scaffold ID	Ga0268250_10047775 Open in IMG/M
Source Dataset Name	Agave microbial communities from Guanajuato, Mexico - As.Sf.e (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1664
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Guanajuato, Mexico
Coordinates	Lat. (^o)	21.7658	Long. (^o)	-100.163	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031689	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268250_100477752	F031689	GAG	LTYFSALASDSVPSDTSTEVDNDPWSAMDALTSMHVPIRSSLEKYQDVGDAQESVCMVPGRRKGQKPILFGQIKSELMSREESESENEPPQFTHYEPNVLRMMESMGYDLTNGPGLNFSKGRRTLLRSFVLKGKTPDYYHRTRRGLGYVSTPIPSASESEESLYNDYSSGTSSWESDVSVSNLFEELSVYMVSTSHLEDRDEEMIQSDTDP

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.