Scaffold Ga0307399_10529707

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307399_10529707

Scaffold Ga0307399_10529707

Overview

Basic Information
Taxon OID	3300030702 Open in IMG/M
Scaffold ID	Ga0307399_10529707 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-14 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	579
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.012	Long. (^o)	-0.0106	Alt. (m)		Depth (m)	33
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009794	Metatranscriptome	312	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307399_105297071	F009794	N/A	FPFCSAAPLLLPAIRVYTQSTDCETMIMPMPPMPMQMGGASDYARSMSPIMLAILVIQTMVCTLRMFVLLDIMGGFIMAIAIGLGWYAWKEDMHITFICYWGMMSLFNGVFDLVKLIDFQVKSPLPLFSNEAPAMYNVASFVQLAIPFSAIGGSLLAWHLYKDATSSGEGSFLARAPPAARLGATNQSSSVL

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