NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310038_10059151

Scaffold Ga0310038_10059151


Overview

Basic Information
Taxon OID3300030707 Open in IMG/M
Scaffold IDGa0310038_10059151 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2125
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002929Metagenome / Metatranscriptome520Y
F100369Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0310038_100591512F002929AGGAGGMSQSFRPVKKIWNMHSSCFVEPEELIALLHDLAARVGTASEEHEYGENKAVWLEDGNKVLDYMEADERFNAASFKDSMEEQGIVIKKDELTTLIDNMRSLAKQWRNSIGQHGELVFYIDA
Ga0310038_100591513F100369GGAGVPTDDTIRKRDQKRLREWFLTLGSPVQSREIRVVLQYLQALDVCDLLTQSAERQAELASAALFRFGLDTLATGFWIACVATDEWLRGQGEVHIPSSLERTIATLPPQARNMLDEVVNSGFVNDSKRTLLKDVLNPATHGDALVNVVRIGSALAQGKNWAQYLSTLMNELTHNFAVLIRELAWNRSCINGW
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