NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310038_10064374

Scaffold Ga0310038_10064374


Overview

Basic Information
Taxon OID3300030707 Open in IMG/M
Scaffold IDGa0310038_10064374 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2016
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037652Metagenome / Metatranscriptome167N
F064316Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0310038_100643742F037652N/AMDPIPYTHFWSEEPETQRRAWRPTDEVRRRLMRLWMIQALLLGAIVLVAGVLTRESKRVPPIYAKLPNGVIFETTTGNLQMDRLARTELVNNVLQILYYQEGSFNYLETVKQNVKPQLLGRFRAEMQNASKQTNSTVYLNVVETFEALNVPAKGFDAVTKGVLSKRSNQESASAPIYIRTRWLLSGDRYLLSRVEEIRPGDYYELFLAEKERLKKLSKPELERELGVRKNQEIPLPNRNHLF
Ga0310038_100643743F064316N/ATTQSRCLHQNCRTAPYNGRAPTAVLQAMLGNAQEEASLEVADPKAVKPARKVGALKMLLRQFEATGNPPLQGEEILPTKLVGDGNYHWYSLAWLRWLAQWERLKTLVLVIILLALLAVYGLIRQRRSCQVTLPEPSTEMLLKAKGFDAFNQNQAEAFILFVANAANQASSEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLKNVLPSEFPIYTLYISEVTRWRYNPATRIVSACVKGFRMSHTFSGKSGMEPYRAQMEIFWEPMSNRNKWGYYVQRLDEFYGAAAEAYDAELKTRDRTGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.