NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308139_1005463

Scaffold Ga0308139_1005463


Overview

Basic Information
Taxon OID3300030720 Open in IMG/M
Scaffold IDGa0308139_1005463 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_952_Surface (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1673
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080702Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0308139_10054631F080702N/ALKLLTGSMCALLSVEAQSDGNPHHWDRHRRCDHTDYTPKCGACEGVGGIVRSDKADDIDIVPCKVETSTPSPKRPIWGDPFTELASHEILIGKKMDPACFQAFPSNDSTSTNCYKPQEVQLWSEMKTKKALVLKANQAGNAWGLVGNVTSYIYHQGVNMWIVNHLPLTVTQTICTEPREGGDQTKPAVNAVQYNWVDNLFFVATETLGVEYGVGSMTLDHWAFGPHHAWTDPATGLIVRMWQPFNGLQIFTPGNWKTEITPEGQGYLAELAADGKTAPKAALPGGSTFRIKCGADGFHKNSTADETALGSNHPAGHEQASTADLKRARTKVPRATYKGDDFESMSSLLNKWMLKEAPNSRSCEEFSVEELQRLQITLFMLRDPQLNTVYNSSADARQMPHDIEVMSKEWESLNAEAARDPELARMHRDGHCHETVMWYVHHLPQSLKAEIKDKAALPLLSKMRHDVLASKPHAVRIQRAYEEKVSCASCHSAVFPSAKTGVITV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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