NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308139_1050447

Scaffold Ga0308139_1050447


Overview

Basic Information
Taxon OID3300030720 Open in IMG/M
Scaffold IDGa0308139_1050447 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_952_Surface (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)624
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064765Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0308139_10504471F064765N/ARCPFIWCFSPTMKSAIFFAAIAQVGAVSLRNADQACMDSDLKMRSEFQTKLKGVCEDMCKEVNAYPNCAQCPDFQAPDSTPGVMTWEELLEHMDNLSEWGHETIKEWHSQASFVQGSCNDHQKVALAMVEMHAVQMGVPCEEMCKRIGVYPKCQCAGFDGQPADTDGRSCVAATGQDPSNPLPNDAFLTCVESKTAISFAQVMKQVDN
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