NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308137_1000843

Scaffold Ga0308137_1000843


Overview

Basic Information
Taxon OID3300030722 Open in IMG/M
Scaffold IDGa0308137_1000843 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_943_SCM (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4073
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)81
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001478Metagenome / Metatranscriptome687Y
F099359Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0308137_10008431F099359GGAMDVSGGVDAENRNIMIYNKHGRTNQQWDLIYADDWVRDPVKGELNKEFGLYVERPFFIVSQLPANRYLDLIDNRNMVIKTPNGRNTQIWWFDQASLTIRTK
Ga0308137_10008435F001478AGGAVNERGKVLDVDGGLDDQNRNVIAWNKHNGLNQQWDIIYADEYPDEPTKGEFNEDFGLYVERPFYVVSQLPSHRYLDLINNRDFAIKTPNGRNTQIWYFHQQSLTIRTKLNNQSWDIKSAGKTQNMQVWSTNSGWF
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Institute for Fundamental Biomedical Research
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