Scaffold Ga0308138_1024247

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308138_1024247

Scaffold Ga0308138_1024247

Overview

Basic Information
Taxon OID	3300030724 Open in IMG/M
Scaffold ID	Ga0308138_1024247 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_949_20m (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	870
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	75.0007	Long. (^o)	-150.0027	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004949	Metatranscriptome	417	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308138_10242471	F004949	N/A	PIQKILQTATLTVAFAPMLAILFLAFRMRVNQLTKNRGNPPVWAQVCMYFCTYAVLLMTLIVCVIPLFTGETIGVDPKTGDIPQDTQPFKSQACAIAFTGLKYLILLMLYGGAIAVTYAIITFKPPAGTWPEGKTFPVAPAVQCTMILSCQYFLVYGGIQVARTWTQFVGVAANFTSKAETALMTATASMNFAPMLAVLFIGARMRALNMDPINGNPQKWAQNCFFMCTYALLAQTLCSVAVPLVLQGDVKVGKTEGDMEYTVENKLLGTCLTVGRYAIMVCIYVGFTC

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