NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307482_1008851

Scaffold Ga0307482_1008851


Overview

Basic Information
Taxon OID3300030730 Open in IMG/M
Scaffold IDGa0307482_1008851 Open in IMG/M
Source Dataset NameMetatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1776
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008825Metagenome / Metatranscriptome327Y
F039232Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0307482_10088512F008825GGAGMNCVELQQSLAEAEDGSMPEQRAHLVGCPACSALVKELDLIIAAAGQLQAADEPSPRVWNSIAIALRQEGLIRPQRQPPVSSFSARWGAARWLVPAAAMVLLAVGIYMRRESPAPSQPVPQQASVALPAGGIDLNDEDLLQEVAANAPAMKSQYEDNLRQVNESIREAQGFVDESPNDADARRSLMDAYHQKSMLFEMAMEHSLP
Ga0307482_10088513F039232GGAGMLSKRGVSLVAIGVIVAGTLVAQSKKEFHFAVGPKAGVSVINPYGSISVKPALNNTIVVNAFLHSDKVEVDNNQSGNRVDIQSHLLAGADTESGRVDYEILVPADASITLHSSTG
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