NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265460_10095641

Scaffold Ga0265460_10095641


Overview

Basic Information
Taxon OID3300030740 Open in IMG/M
Scaffold IDGa0265460_10095641 Open in IMG/M
Source Dataset NameForest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1375
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.265Long. (o)-71.2174Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012043Metagenome / Metatranscriptome284Y
F069101Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0265460_100956411F012043N/ALQLVLRRAAISTATIRHQKGQGRIKMATQRTSFEPGLAVSTIFDQIGPLQEQLAQIVVILEPIQQLSELASVFEPLREFEERIRDLAKMLAPMHNFQDQLQQVLKQFSPLETLDQELSQLCLSFRESLCQLATALEPAAALQDRLVDLCTAFEPAKALRQEFSALARIFERSSTDLPH
Ga0265460_100956412F069101N/AMILFDIKDDLYGPPSNEREDSNAFGARLAVSEVFDQLEPLRAQLARIGSFHEPMQRLGELANVFDELRKFAMQVSDLARVLESMHNFQDRLRPVPNQFAPLGALDEKLKRLCASFAEHLRELADALGPAGTLQDQLSQLASAFEPAKVLREEFLGLAQSFALRPPAMSDGRNGSSGVLRKSPPR
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