NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265459_11897816

Scaffold Ga0265459_11897816


Overview

Basic Information
Taxon OID3300030741 Open in IMG/M
Scaffold IDGa0265459_11897816 Open in IMG/M
Source Dataset NameForest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.2662Long. (o)-71.2166Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005592Metagenome / Metatranscriptome395Y

Sequences

Protein IDFamilyRBSSequence
Ga0265459_118978161F005592N/AAGSVKGLVLMESIFPIGDNSTVFDDPKMKQKLMAEIKKGKIKPQTASDEVDVDEDQDAKIDAQANEIWSYYDPKNLGTINKKQVTQFFKDCFLLHCLRKRQKEKECLGMGISMKQALDGAVRMLDSSGQGTCTRAAFVDFLNEVDLVELLGPFTGQTGPRNIPSRLPQNMMFDPSTLPKDGGPKINLGEVQLRDYNQTLE
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