Scaffold Ga0265461_10272790

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265461_10272790

Scaffold Ga0265461_10272790

Overview

Basic Information
Taxon OID	3300030743 Open in IMG/M
Scaffold ID	Ga0265461_10272790 Open in IMG/M
Source Dataset Name	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1146
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	Canada: Quebec
Coordinates	Lat. (^o)	47.2736	Long. (^o)	-71.1993	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005592	Metagenome / Metatranscriptome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265461_102727901	F005592	N/A	RQSAKKQDNKAMGAGSVKGLVLMETIFPSGDNSTVFDDPKMRQKLMNEIKKGKIKPQTASDEIDVDEDQDAKIDAQVQEIWSYYDPKGLGTINKKQVQQFFKDCFTLHCLRKHQKEKEALGPGISMKVAQDGATKMLDPSGAGTVSKQTFVDFLNEVDLMELLGPFTGQTGPRSIPSRLPQNQMFDPSTLPKEAGGKVNLNEVKLRDYNQTLE

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