NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138305_1135327

Scaffold Ga0138305_1135327


Overview

Basic Information
Taxon OID3300030758 Open in IMG/M
Scaffold IDGa0138305_1135327 Open in IMG/M
Source Dataset NameForest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_OS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2468
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSouth-western Pyrenees, Aspurz, Spain
CoordinatesLat. (o)42.0Long. (o)1.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068861Metagenome / Metatranscriptome124Y
F097372Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0138305_11353272F097372N/AVNSITSGLLNYNFSTIEMSDESIAHTIRNILEQCNSTIISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPTTSAITQASSEEDGLRARRLQLARELKQKQVRLTAAAPGDRSQINLEIGKLLSERAKLDRLLKQLDTIS
Ga0138305_11353273F068861N/AVKMPSATASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCDFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFRGKYTLHGRY
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