NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315877_105393

Scaffold Ga0315877_105393


Overview

Basic Information
Taxon OID3300030768 Open in IMG/M
Scaffold IDGa0315877_105393 Open in IMG/M
Source Dataset NameMetatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T30 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1210
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.7417Long. (o)-117.7042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042666Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0315877_1053931F042666N/AMDLHKNAFQRSSSRVAHVTRPVDNSTSGSTVKRCFECSQSARFTKETIHNGMQLLRVRYGLPYAELPDCTPMELSRFLSFLLLQGKERTSVAFPRQQKKKTKKTINREDKDGLCSLQRLCRKDRWALAHGCSSIKRNLPRSCKRHTPSARKAWEASACSQPSPPSSGYLQHVRRVVTDSFRPGWDRNYHSFVGNHVPNPSSRACKGRADALWAGRRSEFITAATSELEATPPELTGRYKDILSAGKTRPMLIFDESVELLAPLHKLLYSHLAKQDWLLCGPPTDKKMTSVLTGAVQTSVDLVAATDGLNLTVTEAILDALFFTSVKIPRTLRALAKSSLRPTFLGLGGKVKRISHGQMMGAYLSFPLLCIHSYCAASWAARDQVGARFLVN
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