Scaffold Ga0061016_10119092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0061016_10119092

Scaffold Ga0061016_10119092

Overview

Basic Information
Taxon OID	3300030771 Open in IMG/M
Scaffold ID	Ga0061016_10119092 Open in IMG/M
Source Dataset Name	Coassembly of Cow Y Switchgrass
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	500
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location Name	USA: Illinois
Coordinates	Lat. (^o)	40.102108	Long. (^o)	-88.227299	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021692	Metagenome / Metatranscriptome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0061016_101190921	F021692	N/A	YKTEYNYDDLEKLNQEVQSILDNELAAEHFIRQLKYLFNKGIYGRINKRHKAELIELGFTPEKMEIIFEAEKKYFEGNLEKNEEEEKKQICTLKDFDMMTEMPVVDTKYRPMVDEEKNIDFKKQKLLINLRLNKDGKDKREVIQVDKTKLIGLFSQMEKLQEELDK

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