NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0061016_10172314

Scaffold Ga0061016_10172314


Overview

Basic Information
Taxon OID3300030771 Open in IMG/M
Scaffold IDGa0061016_10172314 Open in IMG/M
Source Dataset NameCoassembly of Cow Y Switchgrass
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)809
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026766Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0061016_101723141F026766N/ASLIYTSNTSDNPYRTGVLIGNYVEDMYGLDHQKLYKLRSTSPSPILNSAKNFYFQNNESHKNQNISEHTDKFRWPKFSKEMLHNPGNELTMTCTSNFDLNIDFNRKNVQDFMTLSKANEYVLDNKNAFLPDEVKVENFQKLNEDMVKGIITPPTVFSETQRALKLSHIKDTNGFLYTRKNGLDSKLLFGHGCQKNFKKNDLASVYHLSINRKIPTKTFFDSHWRLDENFKHFPKKDRDYSDWGFRKYKEYGKFTKKFDKKK
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