NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073988_12353605

Scaffold Ga0073988_12353605


Overview

Basic Information
Taxon OID3300030780 Open in IMG/M
Scaffold IDGa0073988_12353605 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S19_0.2 metaT (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1239
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)5.9Long. (o)-41.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F012583Metagenome / Metatranscriptome279Y
F023620Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0073988_123536053F001026GGGGGMAIHTLKLDDLELTALITHLEGQSEMMVESRLNCSNPRELPDREEVLLNMVYSKAFTIGYEADKNPKVDFNLIQNQDRIYKY
Ga0073988_123536055F023620GGAGGMRTALFLSEYDLSTVHYLCTYYKDNANLDAQDVDYINELQNRVNSLMEVSK
Ga0073988_123536056F012583N/AQLMRLSDQVKVKAFDKYVMRGGDQSLQNIEDLCDFGFNMCQLGYDPEQFNDVVIDVICKLTEKLEANS
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