NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265792_102027

Scaffold Ga0265792_102027


Overview

Basic Information
Taxon OID3300030808 Open in IMG/M
Scaffold IDGa0265792_102027 Open in IMG/M
Source Dataset NameMetatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1369
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.7417Long. (o)-117.7043Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042104Metatranscriptome158N
F042105Metatranscriptome158N

Sequences

Protein IDFamilyRBSSequence
Ga0265792_1020271F042104AGGAGMADQGQQQQQAAQRGGGNARRGVGRNAASGAPTTVFLNPERAPPLISKWQKLLGKDLSRIEVVYTADGVTVNLYAKEGTPFEDLGNGAFSVADYKAKKEEAVKPSSEDAKFAFRNKFEVRLNQAFPEGIDLGDGSDTALRNAVMALPFEQRRIMLMSNKQFKSAYPNGSAGAAGAAA
Ga0265792_1020272F042105GGAGLDGAPDPVDTGSKSYDKRRREMAHFVGMDFLFTQREYCQSLQTDDTGTRVLVNSTKNGDILSVRPVPKHLDKVWFTRKLRFPRQYLGISRMDDRCKKLSYMVHLLTRHGFQTRAILKSVYRLSLTWMFSRYEDMRKHVSSITRKIIVRNGPTRSPWVSRKDLPQYPYFYGEKRHENGIEAPLWSRSLPRKKGDVASETTQLV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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