NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265750_1002197

Scaffold Ga0265750_1002197


Overview

Basic Information
Taxon OID3300030813 Open in IMG/M
Scaffold IDGa0265750_1002197 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1885
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F015771Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0265750_10021973F000703N/AVQVREYQESDLGALRAIHAAQGFAYPLPDLSNPLFITKLILSEQAASSPESEAVNGNIGERSCTQSPARQEKIIGAALLRLTAEAYLLLDPKAGTPRDRWKWLLQLHAATERDAWQRGLEDVHAWLPPPIASKFGKRIAQLGWKRDDAWTPYCKRLTAPPNNFCP
Ga0265750_10021974F015771N/ANVQASNGWFDLSVTDPSNARPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPTAVAGGGTTGPTPLPSSGSGVLPNGQIRGGNGFGINPGSRVVRQTIL
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