NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265746_1053699

Scaffold Ga0265746_1053699


Overview

Basic Information
Taxon OID3300030815 Open in IMG/M
Scaffold IDGa0265746_1053699 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)567
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9982Long. (o)10.7894Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003973Metagenome / Metatranscriptome459Y
F008109Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0265746_10536991F008109N/APGFLDAVTYPEISFRSELLAWVPAGWRAVGCLNVRGTEHELACQLDLHLGGTRPDGSPRILVAGSWVIDSRWITSQRIPALGRRVLMTCSFSLQPDM
Ga0265746_10536992F003973AGGAGGMFDRIAQWQPDQGAASAARAVTALALAGLAVIHVVDLPG

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