NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075388_11536250

Scaffold Ga0075388_11536250


Overview

Basic Information
Taxon OID3300030848 Open in IMG/M
Scaffold IDGa0075388_11536250 Open in IMG/M
Source Dataset NameForest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1069
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041383Metagenome / Metatranscriptome160Y
F042049Metagenome / Metatranscriptome159N

Sequences

Protein IDFamilyRBSSequence
Ga0075388_115362501F041383AGAAGMVSTKETRPAAPETQKWSFSADGKPLSLDEFLESFKKQGLFYEGKEQWLKGVVKVSWENFFLVCTEELDDISQRAAKMLVQYCLEISEKVASRIRGPVDPTKIAE
Ga0075388_115362502F042049N/AVRKNNRIFGTLPLADLDDQLGFGDDLIEAFYKLTKDERTVVMSIVDRLKPGMTGYDFEGFDLQPAVLKLLTYHRLVLHNGDKQNSVLYARWLSSVSVVDKKMILHIDPGLYRHLERLKNHQKRGFRESGGQAGEPVLDPPL
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