NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075372_10858924

Scaffold Ga0075372_10858924


Overview

Basic Information
Taxon OID3300030853 Open in IMG/M
Scaffold IDGa0075372_10858924 Open in IMG/M
Source Dataset NameForest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 Emin (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)709
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005592Metagenome / Metatranscriptome395Y

Sequences

Protein IDFamilyRBSSequence
Ga0075372_108589241F005592N/AGNMGAGSVKGLVLMETIFPSGDNSTVFDDPKMRQKLMAEIKKGKIKPQTASDEIDVDEDQDSKIDAQVQEIWSYYDPKGLGTIQKKQVTQFFKDCFTLHCLRKHQKEKEALGMGISMKVALDGAVKMLDPSGTGTVSKQTFIDFLNEVDLVELLGPFTGQTGPRSIQARLPANMMFDPSTLPKDAGGKVNLGEVKYRDYNQTLE
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