Scaffold Ga0265742_1023288

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265742_1023288

Scaffold Ga0265742_1023288

Overview

Basic Information
Taxon OID	3300030874 Open in IMG/M
Scaffold ID	Ga0265742_1023288 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI4 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	539
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9992	Long. (^o)	10.7901	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027941	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265742_10232882	F027941	AGGAG	MKKAAFYAGLFAVLASPFAALAAPAAQSSMKADSDSVTITGRVSCSRFGGGSVTARKGMSVAQTIQYCANTMGGQYTIVSGKQIFLLTGDRNVLAKMSGQTVTVAGRLNTNEADRPSYALMGTVEATSIAPAKN

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