NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265765_1000948

Scaffold Ga0265765_1000948


Overview

Basic Information
Taxon OID3300030879 Open in IMG/M
Scaffold IDGa0265765_1000948 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2555
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002337Metagenome / Metatranscriptome569Y
F099706Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0265765_10009482F002337GGAGMNLAIILVISSAVALGVILRLAVSRSLQAKRSLSSATTIRSLDVEAFRNLINPAEDQYLRRRLPAAQFRQVRRARLRAMVAYVQVAGNNAGVLVGLGEAALASGDPRVAEAARQLVEHSLLLRRNTTLALARIYVALALPSSNFAAVRVIERYEQVSGSAMLLGRLQNPRAAVRLSARI
Ga0265765_10009483F099706N/AVCVLIWCYYLLVVPQKNATTSAVLLPEHNLDIWNRELERLLQP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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