NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315860_103437

Scaffold Ga0315860_103437


Overview

Basic Information
Taxon OID3300030899 Open in IMG/M
Scaffold IDGa0315860_103437 Open in IMG/M
Source Dataset NameMetatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T24 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1170
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.7417Long. (o)-117.7042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038019Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0315860_1034371F038019N/ALKDPPVAWLLLSITMTRSGTRFRTTCTAASVKPNIGSEAQTCRGCFRSACDTRETISNGLRLIRIRYRLPGSELPDLEPKELSKYLSYLLLQGRRRASVAFPRKQSLSRDSDGLLPLMRMLKHERWEFAHSVSSIKRSLPQGCKQHTPSARPAWEQNAFSTPPPPSSDYLQFVRSEVSKLFPYDWDRDYDDFVWRHVPNASARMNSPRADLHWCGNGKEFRRQCLTGRSVPIDQPVRARYKEVMSAGKCRPLVIYDETTEVLAPLHKCLDSHLMRMSWRLVGPPTEKKISSACVYPCQTSVDLVSARQPVA
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