Basic Information | |
---|---|
Taxon OID | 3300030907 Open in IMG/M |
Scaffold ID | Ga0074013_11935774 Open in IMG/M |
Source Dataset Name | Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood TCEFB (Eukaryote Community Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1170 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Coluteocarpeae → Noccaea → Noccaea caerulescens | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Montana | |||||||
Coordinates | Lat. (o) | 46.9233 | Long. (o) | -110.871944 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002212 | Metagenome / Metatranscriptome | 582 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0074013_119357741 | F002212 | N/A | MLKATAAALALALGVQAADPVPLCLPKVHTVHLSQFQDVEHEHRHHPPDERMAGDELQIFFDMTQQKSLVYIHNDGPHSGPHRGDPDRAMLTDYGKQLQWDWEWVNKTVQRCTLQVQTRPMAPICVSTAANMTGTGTISEDFKVDFYLANVVDPARQVTESVFTIVEQGTTSKPIKQDRQGQQTQSDRTVVRWFDRVSWYNMVETPIDPKQFALPAECPA |
⦗Top⦘ |