NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074013_11952041

Scaffold Ga0074013_11952041


Overview

Basic Information
Taxon OID3300030907 Open in IMG/M
Scaffold IDGa0074013_11952041 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood TCEFB (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)601
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)46.9233Long. (o)-110.871944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064332Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0074013_119520411F064332N/AAKLVTTVYKTVGESAYVGFDLDIEETATNLTQIGSFVKAFRAGAPYDTFPLQLCTLSGLADPGSGDNFKINIMKTYGPSAKGINYLNLMVNNVDSSCTVMSAFWRNPALDFLPPQNKILGVWGEIYPSYVLHGPGCTDGSSPLFSWIKQNGIGIGIWQWWVGPTNEISSVITAIRQSP
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Institute for Fundamental Biomedical Research
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