Scaffold Ga0138300_1575102

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0138300_1575102

Scaffold Ga0138300_1575102

Overview

Basic Information
Taxon OID	3300030922 Open in IMG/M
Scaffold ID	Ga0138300_1575102 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_OS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	675
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	South-western Pyrenees, Aspurz, Spain
Coordinates	Lat. (^o)	42.0	Long. (^o)	1.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004576	Metagenome / Metatranscriptome	432	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138300_15751021	F004576	N/A	IPVPKISSNDHDREFWLDKVVLCSYDIIPQNIKFHLQADSEISLPDIETKGTRTHLVIKLEKLLTELKDMEFYYRKKTFPELEDHGRVTFRIKGNGAKLTFTYKLLQGPQDTVPKISEGYASFDISEMEIDFDKSTLKHPLMVPMLTQLFKTQIRMEIEKQVEHNLIKFMDQLGEKLTSSLKEMNKPFHYGLEAAKKAVKSSQLAQVYEKRREKLE

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