NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075401_11285132

Scaffold Ga0075401_11285132


Overview

Basic Information
Taxon OID3300030935 Open in IMG/M
Scaffold IDGa0075401_11285132 Open in IMG/M
Source Dataset NameForest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 SO (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)986
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052758Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0075401_112851321F052758AGGGGGVGQGKQGRRSDGRFLGFWARLNCENMPVIPAWLVRRCLDDPRRIPYLLIWKDERHGGEIKEAVRLARYVEPSSLVTDNHVELKRTDASLTVLRFVWRALPRNGGRALLLVCSYCNTPRRHVYGWEWDSSSGRSNRVRSISWRCRSCARLRYSSEGGARVLRGGPISRLIGYDVPDLHSPRPAPWLPYVFSSIESAQHWLAE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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