NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138302_1653947

Scaffold Ga0138302_1653947


Overview

Basic Information
Taxon OID3300030937 Open in IMG/M
Scaffold IDGa0138302_1653947 Open in IMG/M
Source Dataset NameForest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSouth-western Pyrenees, Aspurz, Spain
CoordinatesLat. (o)42.0Long. (o)1.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006580Metagenome / Metatranscriptome369Y

Sequences

Protein IDFamilyRBSSequence
Ga0138302_16539471F006580N/AGWCSVNVLYNDTIPGKNCAGLNTTITPRINCTGSFSTKDCLVTTTSISTGMATGHATGNPNNMWYCDPINATCIQTPNGTLPGDVCKAQCTVNPIPPILQNRYFRGLEIDTTYKQGEWRAHFGTTTVTIVSPTGTVIQGNVTVVSEYISISTPAGKYQTLWQLQPGPAVDNLSWGWGPLNGLPPNSFDESMTKPGQASFWFVACHAGAPTSICDFS
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Institute for Fundamental Biomedical Research
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