NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074031_1875916

Scaffold Ga0074031_1875916


Overview

Basic Information
Taxon OID3300030949 Open in IMG/M
Scaffold IDGa0074031_1875916 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C3 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)629
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSweden: Dalarna County
CoordinatesLat. (o)60.97Long. (o)15.87Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004576Metagenome / Metatranscriptome432Y

Sequences

Protein IDFamilyRBSSequence
Ga0074031_18759161F004576N/AREFWLDKVVLCSYDIIPQNIKFHLQADSEISLPDIETKGTRTHLVIKLEKLLTELKDMEFYYRKKTFPELEDHGRVTFRIKGNGAKLTFTYKLLQGPQDKVPKISEGYASFDISEMEIDFDKSTLKHPLMVPMLTQLFKTQIRMEIERQVEQNLIRFMDQLGEKLTTSLKEMNKPFHYGLEAAKKAVKSSQLAQVYEKRREKLE
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