NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308183_1003765

Scaffold Ga0308183_1003765


Overview

Basic Information
Taxon OID3300030988 Open in IMG/M
Scaffold IDGa0308183_1003765 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1957
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003251Metagenome / Metatranscriptome497Y
F074494Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0308183_10037651F003251N/ARQPHPRKGVKVQTKTYTTEKEAKKAAARAYRPAILRLPNGRYACFQAGDILPQGARAVSRWGLNQWRAYN
Ga0308183_10037652F074494AGGVEIRGIPFCEACAREQEVYFAIGELTQEETRDLRSEPLSKSLGKTLGEMLDGMRRQRTDDLAAARRLDLPRVDKPGGLRLRKARQSQPENYQNRGRRSNKVEHMSEDAQVLIRAAREVHVERHGAQTFLPGTYLSFLEAAKRTGIRSDRQRYHDAIEDLEYDGAIEWDESARYARGEKHYLITQHGLHDLGSVGTVAIQEGQERLFEG
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