Scaffold Ga0308183_1019346

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308183_1019346

Scaffold Ga0308183_1019346

Overview

Basic Information
Taxon OID	3300030988 Open in IMG/M
Scaffold ID	Ga0308183_1019346 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1145
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002196	Metagenome / Metatranscriptome	584	Y
F082231	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308183_10193462	F082231	AGGAGG	LTQATTKSVPCQVRSKTQSPCLHRAVAEIRGIPFCEGCAREQEAYFAIGELTQEPQLLRGEPLGNTLDEMLERLRRQRADGLAAANCFDLPNVDETEPLALTTS
Ga0308183_10193463	F002196	AGGGGG	MEYMSEDARVLIRTVKEVHAERHGAETFLPGSRLSFLEAAKRTGIRPDRQRYYDALDDLEYEGAIEWDPSALYARGDKHYLITQRGLHDLGSTGTSAVTLAIQDGQQTLFEG

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