NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308196_1021995

Scaffold Ga0308196_1021995


Overview

Basic Information
Taxon OID3300030989 Open in IMG/M
Scaffold IDGa0308196_1021995 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031283Metagenome / Metatranscriptome183Y
F059212Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0308196_10219951F059212AGGMIRTRFVRSVALTLSVTFALSCASDITPTAPIMAPTAAQDGLIGDLLGVVTGLLGSVLKVIVGVVNPNGIDVHAVKWAPSHVNQARSVSGYIGYGGGTLSIPGSDFTITFPRGALST
Ga0308196_10219952F031283N/AGTIQIPETGFTMSFPVGAVKARIQITVTADEDYVAYKMEPAGTQFSREVTITQSLAATELNGESLRSQLFAAYIADNVSLSGKVPVLYLLPSYTVFSKSGLIPQAQVWTITHFSRYMLAS
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