NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308190_1063409

Scaffold Ga0308190_1063409


Overview

Basic Information
Taxon OID3300030993 Open in IMG/M
Scaffold IDGa0308190_1063409 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081522Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0308190_10634091F081522AGGAGGMTQLLRIAALVVAALTVSASAFAQSSLPLPSTDDVVPAGGSETLGALPMGNLPLPAECPACITVDFNDLTPEQVVSPDRYKTLGLRIEIGPSSTTSGVVEGSLTQVPCDGTRSLKTQPFIGPSFLLRFPHGVTRVSLDAGDIGPSDSDSITVKAFSDDALTTLVAFDIGVLLQGAPTGCVRLSVQAPLIKAVEITSDSVYVLSSNSASGVSS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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