Scaffold Ga0073998_10041505

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073998_10041505

Scaffold Ga0073998_10041505

Overview

Basic Information
Taxon OID	3300031023 Open in IMG/M
Scaffold ID	Ga0073998_10041505 Open in IMG/M
Source Dataset Name	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	617
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	USA: Montana
Coordinates	Lat. (^o)	46.9233	Long. (^o)	-110.871944	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002557	Metagenome / Metatranscriptome	548	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073998_100415051	F002557	GAG	VLMHSSNRLPSGNCDSLRSETFLSYLTRFGTVSNRSSSLSPFFAFTDDARTSPEELVN

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