Scaffold Ga0302180_10001531

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302180_10001531

Scaffold Ga0302180_10001531

Overview

Basic Information
Taxon OID	3300031028 Open in IMG/M
Scaffold ID	Ga0302180_10001531 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18429
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065417	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302180_1000153116	F065417	GGAGG	LRKLALLFAVCASFLSINSAFAQQGDIMFGGGTLLSSAPSGTSQAFQNLAEKGGTYLNVSGDVVGFKRRIGFNVETAWRATQASYYGYESYRPILTDFNALFQPRLGKKLGLDLMGGIGIASTRFYVPFATSCGFFSGCINYTSSDHFMEHLGGGVRYYVWHHFFVRPEVHYYHIQNNTD

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