NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302180_10267859

Scaffold Ga0302180_10267859


Overview

Basic Information
Taxon OID3300031028 Open in IMG/M
Scaffold IDGa0302180_10267859 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)891
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055902Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0302180_102678592F055902N/AGASAKHRAVKAAPQQASVVAHLPLPGASVSQLALQQHGSKQYLYVEQGSRDGFAIVDVTKPDQPSVIRSEVWPNEASTGRLQMVGGRLALAEAPDAATAETISRTETLKVLDLSDPANPRTILTFSGVTSTLADDARNLVYITNSDGLWILKHAPEQAMPWDTHACRSEDASSDTASCL
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