NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074012_11436007

Scaffold Ga0074012_11436007


Overview

Basic Information
Taxon OID3300031029 Open in IMG/M
Scaffold IDGa0074012_11436007 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood TCEFA (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)939
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Arcellinida incertae sedis → Sexangularia → unclassified Sexangularia → Sexangularia sp. CB-2014(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)46.9233Long. (o)-110.871944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032629Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0074012_114360071F032629N/AIDGAPTDEWQANSPMNTVGPHDDSTRFFIGVNEGSQTYSAPKVTVSQPFLTVQLRGEASTSNIVEFDDYDDYDDGEFQMLEVIYKCLTFGQAVVTVSMDVPPFNSVKFAWKKDCGGGIKSGFDVATREGVAANPDVVKNAETQEKWHPESHSAVVPKDEKSTIFYVRMTGNDELSQFGKPIITVIPPIFKPRLAGDLGEGGIVSSTPRTLEVIYNCRKKGEAEVTMSIVLPKYEMVEFSWEKECGARIVTAPKVYTANQLMVLFTMSTLSIIAVLVFVYLRFKKRRSEKEKARLAALRAQEETETY
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