NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073986_11949520

Scaffold Ga0073986_11949520


Overview

Basic Information
Taxon OID3300031038 Open in IMG/M
Scaffold IDGa0073986_11949520 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S14_0.2 metaT (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)926
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-3.9Long. (o)-28.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003808Metatranscriptome467Y

Sequences

Protein IDFamilyRBSSequence
Ga0073986_119495201F003808GAGGMKECTPGGMNGTCEGVAPHMRTIVEAPGVSLFCFSVYTADTGSEKPSHELELLQMQHENAWNVFSCTEWAIYSDVVAPLGGGDMTIRVEDVRNDFHFAKRKEAKTWINTGMFVQVWTAVRDAGHALNHNWIIKADADAVFFPQKLIEVLRGAQVPAEGVYMENCKFVDWGYFGNLEVFSKQAFTTLVNNLDTCYSSLPWKVGVHEGKYGPMGEDLFAQKCMDLLGVAKQENFGLTTDGACEADRPVGQEKNKKYIPNCEGVSTPSIHPFK
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