Scaffold Ga0315893_106019

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315893_106019

Scaffold Ga0315893_106019

Overview

Basic Information
Taxon OID	3300031045 Open in IMG/M
Scaffold ID	Ga0315893_106019 Open in IMG/M
Source Dataset Name	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T35 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1208
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7042	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104166	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315893_1060191	F104166	N/A	MLLNPERAPALISKWQKLLGKDLESIQVEYRADGVAVQLFGMPGTAFEKKDGDGETVSITIPEYRDIKAKESAPSFEDAKFAFQNKFEVRLNQEFPQGVDLGDGSEAALRSAVQALPFHQRRVMLMSNKQFRTAYPNGFAGGANPPA

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