NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138346_10101469

Scaffold Ga0138346_10101469


Overview

Basic Information
Taxon OID3300031056 Open in IMG/M
Scaffold IDGa0138346_10101469 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S12_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)811
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-5.7Long. (o)-26.0Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055767Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0138346_101014691F055767N/AFWVMGGSTGDDSYDHTITDKVQAYSPTEQAWSVETSLTSPRHKACAVTIDDNIVITGGTMLGLGKVKPVWLAEIGTRTAEAWDGTSWRSIPSLSRAKVEHGCAVATISGARGVVVVGGATGDDVVEFLDWDIRNTWRTLGKLNRGRGMMPGIGFIGGQLSIVGGYSWPEGVDIVENWDEDREEWRISPWKLQQARYNHGTLTVPGDMFPQCS
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