Basic Information | |
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Taxon OID | 3300031056 Open in IMG/M |
Scaffold ID | Ga0138346_10147646 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S12_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 619 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium aurantiacum | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Atlantic ocean | |||||||
Coordinates | Lat. (o) | -5.7 | Long. (o) | -26.0 | Alt. (m) | Depth (m) | 150 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F065388 | Metatranscriptome | 127 | N |
Protein ID | Family | RBS | Sequence |
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Ga0138346_101476461 | F065388 | N/A | AGKCCEVECDSAWCAGKDWGVDKNNCQVISTSNTNAQELVCPEGTLLTEVEDGLTGNAHGVQKVASVTCCALDLIAPPTMAPSVAPTTARPTSAPTGAPSTSMPTLAPTSVADCLLGLRDPQDTDSEFLSGIDRCLPGCRSSSRAPTALHRRALESRLLSENNRRQ |
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