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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031085 Open in IMG/M |
| Scaffold ID | Ga0061018_10938214 Open in IMG/M |
| Source Dataset Name | Coassembly of Cow X and Y Rumen Fluid |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 749 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Hymenoptera → Apocrita → Aculeata → Apoidea → Apidae → Apinae → Apini → Apis → Apis mellifera | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Illinois | |||||||
| Coordinates | Lat. (o) | 40.102108 | Long. (o) | -88.227299 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F093017 | Metagenome / Metatranscriptome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0061018_109382141 | F093017 | N/A | LDQTVTVNLIHGMLASLGYYPSNEEILNIQNEVMHMKISEGTKDKNDDINFETFVKIYLNHRPYIEVDVDQIENSFDNMREQKKYHLVNDDNEIIIVREKLIEVLQLLKIDEKRKDGTIETRRKIDDNTIMKIIKDLDGNSPNTPITSMEHFQKKLSRDNFINLLRDNRIEDKEINFMLEKMINENSMNNLPSQLIYKMGDRLISRENFLHMLKENGEKMDDKEIGDILKVLVGDPNPNNLPPMLSFDY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |