NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0061018_11654149

Scaffold Ga0061018_11654149


Overview

Basic Information
Taxon OID3300031085 Open in IMG/M
Scaffold IDGa0061018_11654149 Open in IMG/M
Source Dataset NameCoassembly of Cow X and Y Rumen Fluid
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)761
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004857Metagenome / Metatranscriptome421Y

Sequences

Protein IDFamilyRBSSequence
Ga0061018_116541491F004857N/ALEELNKFRSSPKSIQHQCELIRKGFSRIKAGDPFLNDIDFFVKQLDSMQTLPVLEFNEILSEAAKRELPSFRGKRGYMKYRRSNGVKGIVPEYYLVASPALAADDGADDPINVLTKILLDKQDRLKEGRDILCDPMFTQVGIAHEVYDDENMIIMIFAREFISDEPKFELPFGNITELKMAFDILDADEKEVLDMKEIMETLDEMRFYKTDPTLYNILKDLADRDKCSWPKFAYQVNLRMTDRQSKEGLKTIF
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